BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012D04SP1|AL426353
(784 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1541 0.0
>3x_Contig1780
Length = 27883
Score = 1541 bits (774), Expect = 0.0
Identities = 779/784 (99%)
Strand = Plus / Plus
Query: 1 acaaataacggcccacttaccagaggaagtccaccaggaaccgttttcattaccttgatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 acaaataacggcccacttaccagaggaagtccaccaggaaccgttttcattaccttgatt 1243
Query: 61 tgcccagtattctgacaattcttcgtcttcaccttctcgtaaaccgactataacatctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 tgcccagtattctgacaattcttcgtcttcaccttctcgtaaaccgactataacatctgc 1303
Query: 121 tttggcagttctgagagacaaagttaccaatccgttatctttcaaaggcccaatactagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 tttggcagttctgagagacaaagttaccaatccgttatctttcaaaggcccaatactagt 1363
Query: 181 tttccatggggtagttcttggccaaacacggtcaccagttagctttctgtagttcaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1364 tttccatggggtagttcttggccaaacacggtcaccagttagctttctgtagttcaaatc 1423
Query: 241 acctttaaagatgcacaaattagcagtagacaattctttgtgacattctgcaccaccgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1424 acctttaaagatgcacaaattagcagtagacaattctttgtgacattctgcaccaccgta 1483
Query: 301 cttggtttcagaaggwtcgatgttccagtaatccaatggacctgtccagaatggatgtgc 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1484 cttggtttcagaaggatcgatgttccagtaatccaatggacctgtccagaatggatgtgc 1543
Query: 361 ttttatagagatcttatcctgttcaacgtactctttgattctcttagtgataaaatccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1544 ttttatagagatcttatcctgttcaacgtactctttgattctcttagtgataaaatccaa 1603
Query: 421 atgagttctgtcctccactgggaaamactttggatcctcaagctgagcaatgatgtyatt 480
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 1604 atgagttctgtcctccactgggaaaaactttggatcctcaagctgagcaatgatgtcatt 1663
Query: 481 gaaatcttttatcataacatcgctgaccatgtatggratatctttaccatgcattacaac 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1664 gaaatcttttatcataacatcgctgaccatgtatggaatatctttaccatgcattacaac 1723
Query: 541 agacgatgccaaatcaaaatctagcatgaagacggcaaacaacagatcagtgtacaactc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1724 agacgatgccaaatcaaaatctagcatgaagacggcaaacaacagatcagtgtacaactc 1783
Query: 601 gaaaccggagttatccaaaacgaaatcgacacgaccggtacctttttgtgacttcaaata 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1784 gaaaccggagttatccaaaacgaaatcgacacgaccggtacctttttgtgacttcaaata 1843
Query: 661 ttggraggctttctcagagtcatcaatcagaatattcgatttttgtttcaatctgttagc 720
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1844 ttggaaggctttctcagagtcatcaatcagaatattcgatttttgtttcaatctgttagc 1903
Query: 721 agagttttgaatggcattgatgtcgtccaatgtggcagtagccaacaaggacaaatcggt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1904 agagttttgaatggcattgatgtcgtccaatgtggcagtagccaacaaggacaaatcggt 1963
Query: 781 cgca 784
||||
Sbjct: 1964 cgca 1967
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5237
Number of Sequences: 1807
Number of extensions: 5237
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 784
length of database: 10,358,551
effective HSP length: 16
effective length of query: 768
effective length of database: 10,329,639
effective search space: 7933162752
effective search space used: 7933162752
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)